Stem-loop ptc-MIR3627b

Accession

MI0025491

Description

Populus trichocarpa ptc-MIR3627b precursor miRNA

Literature search

1 open access papers mention ptc-MIR3627b
(3 sentences)

Sequence

ggggguuucuUGUCGCAGGAGAGAUGGCGCUAgcuaaccauggucauaucauauauaucauauggcaaguauuacuugcucuuuguauguaucagcuguaaagauagcucagcuaaagccauccuccugcgacuggacacccug
.(((((.(((.((((((((((.((((((..(((((....(((((...)))))((((((((...(((((((...)))))))...)).)))))).((((((....)))))).)))))..)))))))))))))))).))).))))).

Structure

g     u   U          A      GC     -aaccauggucauaucau      -  uau       a 
 ggggu ucu GUCGCAGGAG GAUGGC  UAgcu                  auauau ca   ggcaagu  
 ||||| ||| |||||||||| ||||||  |||||                  |||||| ||   ||||||| u
 uccca agg cagcguccuc cuaccg  aucga                  uaugua gu   ucguuca  
g     c   u          -      aa     cucgauagaaaugucgac      u  uuc       u 

Annotation confidence Not enough data

Genome context

CM000353.2: 10888890-10889033 [+]

Mature ptc-miR3627b

• Accession: MIMAT0030391
• Description: Populus trichocarpa ptc-miR3627b mature miRNA
• Sequence: 11 - UGUCGCAGGAGAGAUGGCGCUA - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233