miRBase entry: ptc-MIR7830

Stem-loop ptc-MIR7830


Accession
MI0025489
Description
Populus trichocarpa ptc-MIR7830 precursor miRNA


Sequence

uuuaagggggUGAUCUAGAGAACCGUUGCUuuuguuaaaguuguugaggcuuuuugugcaauuuuguccucuuucuauuauagaaaagcaacgguucucuagaucacccauuaaag
(((((..((((((((((((((((((((((((((.(..........(((((...............).))))..........).)))))))))))))))))))))))))).))))).

Structure
-     gg                          g uaaaguuguu    - uuuuug 
 uuuaa  gggUGAUCUAGAGAACCGUUGCUuuu u          gagg c      u
 |||||  |||||||||||||||||||||||||| |          |||| |      g
 aaauu  cccacuagaucucuuggcaacgaaaa a          cucc g      c
g     -a                          g uauuaucuuu    u uuuuaa 


Annotation confidence Not enough data
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Genome context
CM000351.2: 5977842-5977957 [+]

Database links

Mature ptc-miR7830

Accession MIMAT0030389
Description Populus trichocarpa ptc-miR7830 mature miRNA
Sequence 11 - UGAUCUAGAGAACCGUUGCU - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233