Stem-loop ptc-MIR1444d

Accession

MI0025485

Description

Populus trichocarpa ptc-MIR1444d precursor miRNA

Gene family

MIPF0000461; MIR1444

Literature search

3 open access papers mention ptc-MIR1444d
(70 sentences)

Sequence

guuuaucacuCGAACGUUGACCGAAUGUGAAugaaacauuuaaccaucauauuucauacauauucgaucaauauucgagggauaaaa
.((((((.((((((.(((((.((((((((.((((((...............)))))).)))))))).))))).)))))).)))))).

Structure

g      a      C     C        A      cauuua 
 uuuauc cuCGAA GUUGA CGAAUGUG Augaaa      a
 |||||| |||||| ||||| |||||||| ||||||      c
 aaauag gagcuu uaacu gcuuauac uacuuu      c
a      g      a     a        a      auacua 

Annotation confidence Not enough data

Genome context

CM000346.2: 11417598-11417684 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR1444d

Mature ptc-miR1444d

• Accession: MIMAT0030385
• Description: Populus trichocarpa ptc-miR1444d mature miRNA
• Sequence: 11 - CGAACGUUGACCGAAUGUGAA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233