Stem-loop ptc-MIR7825

Accession

MI0025484

Description

Populus trichocarpa ptc-MIR7825 precursor miRNA

Sequence

aauuaaguccucuaucuauccaccuucuucaaucagauccuuacguuagaauaauugagagagaaaaauucacguguuauucauuuguuaugaaacuaucccaaugaccaaaaagccuuaaacacaaaaaaccucauucacaauguaaugcucaggagaacuagaucuaguuagaaaacucuucgaauaauagguguaauauuuaacaccgucuugaacuguugucacugaagaauccgaUUGAAGAAAGGUAGACAGAUAGaggacuuaau
.((((((((((((((((.((.(((((((((((((.(((.(((..((.(.((((.((((((..((((.((((((.((((((((....(((((............))))).......................(((((((((...)).))))...)))..(((((....))))).(((.....))))))))))).))).))).)))....)..))))))..)))).).))..))).))).)))))))).))))).)).))))))))))))))))

Structure

a                a  c     -        a   c   ac  u g    -a      ga ----   a   -   g        auuuguuaugaaacuaucccaaugaccaaaaagccuuaaacacaaaaaa   ---    -  c 
 auuaaguccucuaucu uc accuu cuucaauc gau cuu  gu a aaua  uugaga  g    aaa auu cac uguuauuc                                                 ccu   cauu ca  
 |||||||||||||||| || ||||| |||||||| ||| |||  || | ||||  ||||||  |    ||| ||| ||| ||||||||                                                 |||   |||| || a
 uaauucaggaGAUAGA AG UGGAA GAAGUUag cua gaa  ca u uugu  aguucu  c    uuu uaa gug auaauaag                                                 gga   guaa gu  
-                C  A     A        c   a   gu  c g    ca      gc acaa   a   u   g        ---------------------cuucucaaaagauugaucuagaucaaga   cuc    u  a 

Annotation confidence Not enough data

Genome context

CM000339.2: 14588776-14589047 [-]

Mature ptc-miR7825

• Accession: MIMAT0030384
• Description: Populus trichocarpa ptc-miR7825 mature miRNA
• Sequence: 241 - UUGAAGAAAGGUAGACAGAUAG - 262
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233