miRBase entry: ptc-MIR6462e

Stem-loop ptc-MIR6462e


Accession
MI0025475
Description
Populus trichocarpa ptc-MIR6462e precursor miRNA
Gene family
MIPF0001393; MIR6462

Literature search
1 open access papers mention ptc-MIR6462e
(2 sentences)

Sequence

gggaucggcaggggacaaaaauggcauaagagagguacagugggaggcaggagaaagaccaauaucugccacccuucuuucucUCUUAUGCGUUUUUGUCUCUcgccggucac
..(((((((.(((((((((((((.(((((((((((......(((.(((((...............))))).))).....)))))))))))))))))))))))).)))))))..

Structure
gg       a             g           uacagu   a     gagaaa 
  gaucggc ggggacaaaaaug cauaagagagg      ggg ggcag      g
  ||||||| ||||||||||||| |||||||||||      ||| |||||      a
  cuggccg UCUCUGUUUUUGC GUAUUCUcucu      ccc ccguc      c
ca       c             -           -uucuu   a     uauaac 


Annotation confidence Not enough data
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Genome context
CM000341.2: 24266243-24266355 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from ptc-MIR6462e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR6462e

Accession MIMAT0030375
Description Populus trichocarpa ptc-miR6462e mature miRNA
Sequence 84 - UCUUAUGCGUUUUUGUCUCU - 103
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233