miRBase entry: bdi-MIR7782

Stem-loop bdi-MIR7782


Accession
MI0025404
Description
Brachypodium distachyon bdi-MIR7782 precursor miRNA


Sequence

ucaucaaguauauuacGCGGCAUGGUAUUAGAGCAAGUUGccaaaucuggcugccaugacaauuggugauggugaugguauuguuuuggugACCUGCUCUGAUACCAUGUUGUGAaauauuuuuaaugca
.(((.(((.(((((.((((((((((((((((((((.(((((((((....((((((((.((.....)).)))))...))).....))))))))).)))))))))))))))))))).))))).))).)))..

Structure
-u   c   u     a                    A         -ucug   ---     g  a 
  cau aag auauu cGCGGCAUGGUAUUAGAGCA GUUGccaaa     gcu   gccau ac a
  ||| ||| ||||| |||||||||||||||||||| |||||||||     |||   ||||| || u
  gua uuu uauaa GUGUUGUACCAUAGUCUCGU CAgugguuu     ugg   uggua ug u
ac   a   u     A                    C         uguua   uag     g  g 


Annotation confidence Not enough data
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Genome context
3: 30460954-30461083 [+]

Database links

Mature bdi-miR7782-5p

Accession MIMAT0030318
Description Brachypodium distachyon bdi-miR7782-5p mature miRNA
Sequence 17 - GCGGCAUGGUAUUAGAGCAAGUUG - 40
Evidence experimental
Illumina [1-2]

Mature bdi-miR7782-3p

Accession MIMAT0030319
Description Brachypodium distachyon bdi-miR7782-3p mature miRNA
Sequence 92 - ACCUGCUCUGAUACCAUGUUGUGA - 115
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443

  2. PubMed ID: 24367943
    Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
    Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
    Genome Biol (2013) 14:R145