miRBase entry: bdi-MIR7781

Stem-loop bdi-MIR7781

Accession

MI0025403

Description

Brachypodium distachyon bdi-MIR7781 precursor miRNA

Sequence

uaugaugaggaaacgaauuuGAUUUUUCUGACGACGGACAUGGCugauuuuaugguccggccggagacaauucagcucacaaguaugucuagaauagagcaugagaagugcuggaccuguuguguuguauaguaauuugcguucguauaacagguccaacuccuccuccuagucuacuuuauccauacuucugagcugcauugucuccgguuggaccauaaaaucaccCAUGUCUGUAGUCAGAAAAAUCAAauucguuuccucaucguacccucg
((((((((((((((((((((((((((((((((.((((((((((.(((((((((((((((((((((((((((.(((((((.(((((((..((((.((((....(((.((.(.(((((((((((((.((((........))))....))))))))))))).)..)).)))....)))).))))..))))))).))))))).))))))))))))))))))))))))))).)))))))))).))))))))))))))))))))))))))))))))......

Structure

------                                G          C                           u       c       uc    a    gcau   a  -u c             ---u    uag 
      uaugaugaggaaacgaauuuGAUUUUUCUGAC ACGGACAUGG ugauuuuaugguccggccggagacaau cagcuca aaguaug  uaga uaga    gag ag  g uggaccuguugug    ugua   u
      |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| |||||||  |||| ||||    ||| ||  | |||||||||||||    ||||    
      augcuacuccuuugcuuaAACUAAAAAGACUG UGUCUGUACc acuaaaauaccagguuggccucuguua gucgagu uucauac  auuu aucu    cuc uc  c accuggacaauau    gcgu   a
gcuccc                                A          c                           c       c       cu    c    gauc   c  cu a             gcuu    uua

Annotation confidence Not enough data

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Genome context

3: 6987696-6987971 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR7781

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bdi-miR7781-5p

Accession	MIMAT0030316
Description	Brachypodium distachyon bdi-miR7781-5p mature miRNA
Sequence	21 - GAUUUUUCUGACGACGGACAUGGC - 44
Evidence	experimental Illumina [1]

Mature bdi-miR7781-3p

Accession	MIMAT0030317
Description	Brachypodium distachyon bdi-miR7781-3p mature miRNA
Sequence	229 - CAUGUCUGUAGUCAGAAAAAUCAA - 252
Evidence	experimental Illumina [1]

References

PubMed ID: 23264558
Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
"Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
"Mol Plant (2013) 6:423-443