miRBase entry: bdi-MIR7769

Stem-loop bdi-MIR7769


Accession
MI0025391
Description
Brachypodium distachyon bdi-MIR7769 precursor miRNA


Sequence

acugugggacccacCCGUCAGUGCCAACAUGCCAGccugggcuugccugcauguagcgagucgaugccgaucgccuugccuagagcuucggcggcggcucacgcggggcagagcgcguggcggcuggccacgcggggugagagcgucagcggcgugcacgugccaaggcgacgacagcgccugugcgagggcgggaacggcggcuggucccgagggccauggcgacgaaggcuucaaagcacggugggcacgcgggcgggcugggcaagccaucggcauaccgaagcugggcaaggccauuggcaucaccccgaucuacgcuggcaagcacagacUGUCAUGUUGGCACUGAUGGGugggccgcaccgg
.(.(((((.((((((((((((((((((((((.(((.(((.(((((((.((..((((((.(..(((((((((.(((((((((..((((((((.(.(((((.((((....((...((((((((.....))))))))...))...)))).)))..(((.(.((((((.(((((.(....))))))((((((((.(.....((.((.(((((((...)))))).).)).))..).))))...))))....)))))).).)))((((.....))))..)).)...))))))))))))))))).)))))))))..).))..)))))).))))))).))).))).)))))))))))))))))))))))).))).).

Structure
a u   -  a                      C   c   g       u  au    --  a uc         c         ag        --c g  gcucacgcggggcagagcgcguggcggcuggccacgcggggugagagcgucagcgg   g a      aaggcgacgacagcgccu    ---    g gggaa  g  g -      c 
 c gug gg cccacCCGUCAGUGCCAACAUG CAG cug gcuugcc gc  guag  cg g  gaugccgau gccuugccu  agcuucgg   g cg                                                        cgu c cgugcc                  gugc   gagg c     cg cg c uggucc  
 | ||| || |||||||||||||||||||||| ||| ||| ||||||| ||  ||||  || |  ||||||||| |||||||||  ||||||||   | ||                                                        ||| | ||||||                  ||||   |||| |     || || | |||||| g
 g cac cc ggguGGGUAGUCACGGUUGUAC GUc gac cgaacgg cg  cauc  gc c  cuacgguua cggaacggg  ucgaagcc   c gc                                                        gcg g gcacgg                  cacg   cuuc g     gc gc g accggg  
g c   g  -                      U   a   a       u  --    ua  c ca         c         --        aua g  -----------------------------------------uaccgaacgggucgg   g c      --------------gugg    aaa    g ---aa  a  g u      a 


Annotation confidence Not enough data
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Genome context
1: 2375800-2376168 [+]

Database links

Mature bdi-miR7769-5p

Accession MIMAT0030288
Description Brachypodium distachyon bdi-miR7769-5p mature miRNA
Sequence 15 - CCGUCAGUGCCAACAUGCCAG - 35
Evidence experimental
Illumina [1]

Mature bdi-miR7769-3p

Accession MIMAT0030289
Description Brachypodium distachyon bdi-miR7769-3p mature miRNA
Sequence 336 - UGUCAUGUUGGCACUGAUGGG - 356
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443