Stem-loop bdi-MIR7762

Accession

MI0025382

Description

Brachypodium distachyon bdi-MIR7762 precursor miRNA

Sequence

agggagcaaugcCAGUUGAUGACCAAGUUCUCGAGAagcuagaaaugucguaugauagagaccauccaacgguagagagacaaucaaucuuuccaacaaugaaagauuguaggagccuaggagagcugugaaguagugggcaaugcaugaagaauuucccauuacuuuucaaccccucuacaaccuuucauuguuggaaagauguauuuucucucuacuguuggauggucccuaucauaugaaauucuggcucCUCGGAAUUUGGUCAUCAACUGGCauugcuuccu
((((((((((((((((((((((((((((((.((((.((((((((...(((((((((((.(((((((((((((((((((((.(((..(((((((((((((((((((.((((((......(((.(.(.((.(((((((((((.(((.........))).))))))))))).)).))))))))))).)))))))))))))))))))..))).))))))))))))))))))))).)))))))))))..)))))))).))))))))))))))))))))))))))))))))))

Structure

                              U    A        aug           a                     c   ca                   a      gagccu   a a c  u           c   gca 
agggagcaaugcCAGUUGAUGACCAAGUUC CGAG agcuagaa   ucguaugauag gaccauccaacgguagagaga aau  aucuuuccaacaaugaaag uuguag      agg g g ug gaaguaguggg aau   u
|||||||||||||||||||||||||||||| |||| ||||||||   ||||||||||| ||||||||||||||||||||| |||  ||||||||||||||||||| ||||||      ||| | | || ||||||||||| |||   g
uccuucguuaCGGUCAACUACUGGUUUAAG GCUC ucggucuu   aguauacuauc cugguagguugucaucucucu uua  uagaaagguuguuacuuuc aacauc      ucc c c ac uuucauuaccc uua   a
                              -    c        -aa           c                     u   ug                   c      ------   - - a  u           u   aga 

Annotation confidence Not enough data

Genome context

5: 21791921-21792207 [-]

Mature bdi-miR7762-5p

• Accession: MIMAT0030270
• Description: Brachypodium distachyon bdi-miR7762-5p mature miRNA
• Sequence: 13 - CAGUUGAUGACCAAGUUCUCGAGA - 36
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7762-3p

• Accession: MIMAT0030271
• Description: Brachypodium distachyon bdi-miR7762-3p mature miRNA
• Sequence: 254 - CUCGGAAUUUGGUCAUCAACUGGC - 277
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443