miRBase entry: bdi-MIR7759

Stem-loop bdi-MIR7759


Accession
MI0025379
Description
Brachypodium distachyon bdi-MIR7759 precursor miRNA


Sequence

ggacacauagCAGCCACGUCGGCAUAAGCGAGuaccgcgggguugcuguugugcauucucaggguuuuuuuuaccgcaaaagcgccauucugguugauaugccuucugauuucugggaaugggagucagaauacaugggauauuugaagucaauuugggguuccaauuugguuucuguauccuggagaugaaggguuuaugggagcacaaggagagaagaacaucacuuuugcgaaaaaaaaccccugagaaagcaccacaucaacccguggcccuGGCUUAUGCCGACGUGGCUACcacauguccaa
(((((......((((((((((((((((((.((..(((((((.(((.(((.((((.(((((((((((((((((..((((((((.((((...)))).(((((.((((((((((((((....)))))))))))).....)).)))))......(((.((((....)))).)))(((((((((((((........)))))..)))))))).......((........)).)))))))))))))))).))))))))).)))).))).))))))))))..)).))))))))))))))))))......)))))..

Structure
--     cauagC                  G  ua       g   c   u    a         -        ac        ---------------------------------------------------------------------cgccauucugguu     g  -----            g 
  ggaca      AGCCACGUCGGCAUAAGC AG  ccgcggg uug ugu gugc uucucaggg uuuuuuuu  cgcaaaag                                                                                  gauau cc     uucugauuucug g
  |||||      |||||||||||||||||| ||  ||||||| ||| ||| |||| ||||||||| ||||||||  ||||||||                                                                                  ||||| ||     ||||||||||||  
  ccugu      UCGGUGCAGCCGUAUUCG uc  ggugccc aac aca cacg aagaguccc aaaaaaaa  gcguuuuc                                                                                  uuaua gg     aagacugagggu a
aa     acacCA                  G  cc       -   u   c    a         c        --        acuacaagaagagaggaacacgaggguauuugggaaguagagguccuaugucuuugguuuaaccuugggguuuaacugaagu     g  uacau            a 


Annotation confidence Not enough data
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Genome context
2: 47694041-47694348 [+]

Database links

Mature bdi-miR7759-5p

Accession MIMAT0030264
Description Brachypodium distachyon bdi-miR7759-5p mature miRNA
Sequence 11 - CAGCCACGUCGGCAUAAGCGAG - 32
Evidence experimental
Illumina [1]

Mature bdi-miR7759-3p

Accession MIMAT0030265
Description Brachypodium distachyon bdi-miR7759-3p mature miRNA
Sequence 277 - GGCUUAUGCCGACGUGGCUAC - 297
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443