miRBase entry: bdi-MIR7752

Stem-loop bdi-MIR7752


Accession
MI0025370
Description
Brachypodium distachyon bdi-MIR7752 precursor miRNA


Sequence

ccacuuuaugaAUGCUCUUCCCACUGUCAUUUUCCagacuuaugcugaccaaacaagccuugcugacuccaacauucgaaacacaugggagcucacugauauugcuaauccaaguagucuuuuccgccucaugaagaaaauggcaugaccauaagacaugggauagcuggaucuacuuaacugguaguacuaguuaacacguccauauugacaugggaucuaccagagaagaaaauggcaugaccauaagaacgucuugcaagcgucauuguuucaugacacuugggggacucaugaggcacaauggaguacuuggauaggcgagaucaauaagcucccauguguuccgaauguuggagucaauagggguugcauaauuccggAAAAUGAUAGGUUGGAAGAACACGCcuaaggugga
((((((((.(..((.((((((..((((((((((((.((.((((((.........((.(((((.(((((((((((((((.((((((((((((((...((((.(((((.(((((((((.(((.....(((((((((.....((((((((.((((..(((.((...(((((((..(((((.....)))))..))))))).)).)))..........(((......))).........)))))))).))))......(((((.((((.(((((......))))).)))).)))))))))))))).....))).))))))))).))))).))))...)))))))))))))).))))))))))))))).))))).)))))))).)).))))))))))))...)))))).))..).)))))))).

Structure
-        u aA  C      -CA            a  c      ugaccaaac  g     c               a              cac    a     a         g   uuucc         ---------------------------------------agaaa    -    a    -----------------------------aa   a  gga       au     u 
 ccacuuua g  UG UCUUCC   CUGUCAUUUUCC ga uuaugc         aa ccuug ugacuccaacauucg aacacaugggagcu   ugau uugcu auccaagua ucu     gccucauga                                            augg caug ccau                               gac ug   uagcugg  cuacu a
 |||||||| |  || ||||||   |||||||||||| || ||||||         || ||||| ||||||||||||||| ||||||||||||||   |||| ||||| ||||||||| |||     |||||||||                                            |||| |||| ||||                               ||| ||   |||||||  ||||| a
 gguggaau C  AC AGAAGG   GAUAGUAAAAgg cu aauacg         uu gggau acugagguuguaagc uuguguacccucga   acua agcgg uagguucau agg     cggaguacu                                            uacc guac ggua                               cug ac   auugauc  gaugg c
a        c GC  A      UUG            c  u      ---------  g     a               c              aua    g     a         g   uaaca         caggggguucacaguacuuuguuacugcgaacguucugcaagaa    a    -    aaagaagagaccaucuaggguacaguuauac   c  --a       au     u 


Annotation confidence Not enough data
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Genome context
3: 3518192-3518609 [-]

Database links

Mature bdi-miR7752-5p

Accession MIMAT0030244
Description Brachypodium distachyon bdi-miR7752-5p mature miRNA
Sequence 12 - AUGCUCUUCCCACUGUCAUUUUCC - 35
Evidence experimental
Illumina [1]

Mature bdi-miR7752-3p

Accession MIMAT0030245
Description Brachypodium distachyon bdi-miR7752-3p mature miRNA
Sequence 384 - AAAAUGAUAGGUUGGAAGAACACGC - 408
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443