Stem-loop bdi-MIR7746

Accession

MI0025364

Description

Brachypodium distachyon bdi-MIR7746 precursor miRNA

Sequence

uacaagagaaaAUAGACUAAGAGUUCCAACAGAAGcuacuguuuggugaauauguaaauuuucggacauuaagcauuagcacaucguauucagagcgguggucuucuucagaagcaguuugcuugaggcuuggggcuugaggggcagcuaugucauuccuagggauggaugauucuugugguaccguuuguauagaucaucguggugagaaauaugagauauggacuagaaucccaacagaaguuauucuuuggugaauccuaaggcaauuugcuuucagagauucaagugauauacuccagaaagcgauuugcuuuauguagcugaccauccacucacugaaauuaauuucacggcaaaaaaaaagcugcccccaagccccaagcaaauugauugcagaaauagaucaccugaacuucugaaaguagugugcguaagguucgauaauuuacacauucaccaaagaauaacUUCUAUUGGAACUCUUAAUCUAUGuacucucaug
....((((...(((((.((((((((((((.(((((.((.(.((((((((((.((((((((.((((((...........((((((....((((((((((((((((..(((....((((((........((((((((((((.(((((((((....(((((....)))))((((((.((....((((.....))))))))))))((.(((((((((.(.((...((((...((.((((((.((((....)))))))).)).)).((((((((.((((((((.(((((((....)).)).)))..)))))))).))))))))............))))....)).).)))..)))))).))........))))))))))))))))))))).....)))))).)))..)))))))).)...)))))))....)))))).....)))))).)))))))).)))))))))).).)).))))).)))))))))))).)))))...))))....

Structure

uaca    aaa     C            C     c  c g          a        u      auuaagcauua      cgua       --- -        uc   agaa      ugcuugag            a         augucauuccuagggauggaugauucuugugguaccguuuguauagaucauc  g      --   a g  -aua    cuagaaucccaacagaaguuauucuuuggugaaucc        u        -a   -  -  a 
    agag   AUAGA UAAGAGUUCCAA AGAAG ua u uuuggugaau uguaaauu ucggac           gcacau    uucagag   c gguggucu  uuc    gcaguu        gcuuggggcuug ggggcagcu                                                    gu gugaga  aau u ag    ugga                                    uaaggcaa uugcuuuc  gag au uc a
    ||||   ||||| |||||||||||| ||||| || | |||||||||| |||||||| ||||||           ||||||    |||||||   | ||||||||  |||    ||||||        |||||||||||| |||||||||                                                    || ||||||  ||| | ||    ||||                                    |||||||| ||||||||  ||| || ||  
    ucuc   UAUCU AUUCUCAAGGUU UCUUc au a aaaccacuua acauuuaa agcuug           cgugug    aagucuu   g ccacuaga  aag    cguuag        cgaaccccgaac ccccgucga                                                    cg cacuuu  uua a uc    accu                                    auuucguu agcgaaag  cuc ua ag g
guac    auG     A            A     a  a g          c        u      ------gaaug      auga       caa u        ua   ---a      ---uuaaa            -         --------------------------------------------aaaaaaaa  g      aa   a g  acuc    ------------------------accagucgaugu        u        ac   a  u  u 

Annotation confidence Not enough data

Genome context

2: 53185475-53185979 [-]

Mature bdi-miR7746-5p

• Accession: MIMAT0030232
• Description: Brachypodium distachyon bdi-miR7746-5p mature miRNA
• Sequence: 12 - AUAGACUAAGAGUUCCAACAGAAG - 35
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7746-3p

• Accession: MIMAT0030233
• Description: Brachypodium distachyon bdi-miR7746-3p mature miRNA
• Sequence: 472 - UUCUAUUGGAACUCUUAAUCUAUG - 495
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443