miRBase entry: bdi-MIR7744

Stem-loop bdi-MIR7744


Accession
MI0025362
Description
Brachypodium distachyon bdi-MIR7744 precursor miRNA

Literature search
0 open access papers mention bdi-MIR7744
(0 sentences)

Sequence

aucgugcgccuaAGGAUGGCAAGAUUUAUCGAUGGGugugguguuuaccuugacuccuccagaaaacgucaaggcgagaagaaaccaucuaguuggcacaagucaagucacgcgcucguguggucaaacaccgagucauucuagguccuaaccaaaccagccgguguuugaccacacaggcgucacuuugacucgugccaacuagaugguuucuuuccgccuugucauuucugcauaagauggccaucuucacgccCAUCGACAACUUUUGCCAUCCUUAggagcgcgac
.((((((.((((((((((((((((.((.(((((((((((((.(....((....((....((((((..(.(((((((.((((((((((((((((((((((.((((((((.((((.((.((((((((((((((((.((.......(((....)))......)))))))))))))))))))))))).)).)))))).)))))))))))))))))))))).))))))).).))))))....))..))....).))))))))))))).)).)))))))))))))))).)))))).

Structure
a      g                U  A             u uuua  uuga  ccuc      ac u       a                      a      -  c    g  c                a  cauucua   c 
 ucgugc ccuaAGGAUGGCAAGA UU UCGAUGGGugugg g    cc    cu    cagaaa  g caaggcg gaagaaaccaucuaguuggcac agucaa gu acgc cu guguggucaaacaccg gu       ggu c
 |||||| |||||||||||||||| || ||||||||||||| |    ||    ||    ||||||  | ||||||| |||||||||||||||||||||| |||||| || |||| || |||||||||||||||| ||       |||  
 agcgcg ggAUUCCUACCGUUUU AA AGCUACccgcacu c    gg    ga    gucuuu  c guuccgc uuucuuugguagaucaaccgug ucaguu ca ugcg ga cacaccaguuuguggc cg       cca u
c      a                C  C             u uacc  --ua  auac      -a u       c                      c      u  c    -  -                -  -accaaa   a 


Annotation confidence Not enough data
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Genome context
1: 65104738-65105027 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR7744
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR7744-5p

Accession MIMAT0030228
Description Brachypodium distachyon bdi-miR7744-5p mature miRNA
Sequence 13 - AGGAUGGCAAGAUUUAUCGAUGGG - 36
Evidence experimental
Illumina [1]

Mature bdi-miR7744-3p

Accession MIMAT0030229
Description Brachypodium distachyon bdi-miR7744-3p mature miRNA
Sequence 257 - CAUCGACAACUUUUGCCAUCCUUA - 280
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443