Stem-loop bdi-MIR7742

Accession

MI0025360

Description

Brachypodium distachyon bdi-MIR7742 precursor miRNA

Sequence

caaucucccgcuUCAUUCGCUCAUUCACACAGUagauauuauuccacacuaguagauauuaugccuuggauuagucugcauauccaguuauccacUGUGUGUUCGAGUGAAUGAGUcggcagcucguuca
....((.(((.(((((((((((...((((((((.((((.............(((.......))).((((((..........)))))).)))).))))))))...))))))))))).))).))........

Structure

----caau  c   c           AUU        a    uuauuccacacuaguagauauuaugcc      uagu 
        cu ccg uUCAUUCGCUC   CACACAGU gaua                           uuggau    c
        || ||| |||||||||||   |||||||| ||||                           ||||||     
        ga ggc GAGUAAGUGAG   GUGUGUca cuau                           gaccua    u
acuugcuc  c   U           CUU        c    --------------------------u      uacg 

Annotation confidence Not enough data

Genome context

4: 31253366-31253495 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR7742

Mature bdi-miR7742-5p

• Accession: MIMAT0030224
• Description: Brachypodium distachyon bdi-miR7742-5p mature miRNA
• Sequence: 13 - UCAUUCGCUCAUUCACACAGU - 33
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7742-3p

• Accession: MIMAT0030225
• Description: Brachypodium distachyon bdi-miR7742-3p mature miRNA
• Sequence: 96 - UGUGUGUUCGAGUGAAUGAGU - 116
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443