miRBase entry: bdi-MIR7734

Stem-loop bdi-MIR7734


Accession
MI0025350
Description
Brachypodium distachyon bdi-MIR7734 precursor miRNA


Sequence

ccucuacggcaUUGAACGUGACUGGGUUAACGccauauggcuugacguuaaagaaaaaacgugguaguuucaugagcaaccgaugguuuuugcgggggucaacgccaagguccauggcguuuuuuuuuugugaaaagccaagguccauggggggccccccccccccccccccccccaaaaaaaacuggaaucgacuuuucugggguguaaaauugacguuuuggggggucaacgccauggucuguggcguugagcuccaacaccccaacgccacgaaauugcucaguuuuuucaacgccaggcuauaugccgUUAACCUAGUCACAUUCAACGccauaguugu
...(((.(((.(((((.(((((((((((((((.(((((((((((.((((...((((((((..(((((((((.((.((...(((((((((((..(((((..........((.((.((((.((((........)))).)))).)).))..((((((......)))))).....)))))...)))))))...)))).......(((((((((((((....))))).((((.((((((((((.....)))))))))).)))).))))))))..)))).)))))))))..)))))))))))).))))))))))).))))))))))))))).))))).))).)))....

Structure
-ccu   c   a     C               c           a    aaa        gu         a  a  aaccgaugguuuuugcgggggucaacgccaagguccauggcguuuuuuuuuugugaaaagccaagguccauggggggccccccccccccccccccccccaaaaaaaacuggaaucgacuuuuc        aaaauugacguuuug    g          g 
    cua ggc UUGAA GUGACUGGGUUAACG cauauggcuug cguu   gaaaaaac  gguaguuuc ug gc                                                                                                                           uggggugu               gggg ucaacgccau g
    ||| ||| ||||| ||||||||||||||| ||||||||||| ||||   ||||||||  ||||||||| || ||                                                                                                                           ||||||||               |||| |||||||||| u
    gau ccG AACUU CACUGAUCCAAUUgc guauaucggac gcaa   cuuuuuug  ucguuaaag ac cg                                                                                                                           accccaca               ccuc aguugcggug c
uguu   a   C     A               c           c    ---        ac         c  -  -------------------------------------------------------------------------------------------------------------------------ca        --------------a    g          u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
1: 46850031-46850373 [-]

Database links

Mature bdi-miR7734-5p

Accession MIMAT0030202
Description Brachypodium distachyon bdi-miR7734-5p mature miRNA
Sequence 12 - UUGAACGUGACUGGGUUAACG - 32
Evidence experimental
Illumina [1]

Mature bdi-miR7734-3p

Accession MIMAT0030203
Description Brachypodium distachyon bdi-miR7734-3p mature miRNA
Sequence 313 - UUAACCUAGUCACAUUCAACG - 333
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443