miRBase entry: bdi-MIR7733

Stem-loop bdi-MIR7733


Accession
MI0025349
Description
Brachypodium distachyon bdi-MIR7733 precursor miRNA


Sequence

uguuucaggcUUCUCGCCAUUGCCAAACCAGGGCaagcagaagcgcaaacggacgucuaacucacugcagcagcaagcuccaucaaugccucccccgugcucgcaucucccgcgacauauaugguuuauguguaccauuuuuccgaugccgcagacgaugauacugccuugucuaauggugcccaacaaccuuggucaguggucgguucgacgaugauuggaugaccaaggaugucgggagccaucgaucgagauggcaucaucauuugcggcauaagaaaaugguacauaugaaccauaccuguauaagggagaugcaggcaugggaggaggcgaugacagagcuuucugcugccgugacuuagacguccguuugcgcuucugcuugcCCUGCGUUGGCGAAGGCGAGAAGCaugaaucagac
((.((((.((((((((((.(((((((..((((((((((((((((((((((((((((((((.((((.(((((((.((((((..(((.(((((((((((((((.(((((((((...(((..(((((((((((((((((((((((...((((((((((.((((((.(((.((((((..(((((.(((.(((.(((((((((((.((((......)))).))....))))))))).))).))).))))).)).)))).))).)))))).))))))))))..)))))))))))))))))))))))..)))....))))))))).)))))))).))))))).)))..)))))).))))))).)))).))))))))))))))))))))))))))))))))..))))))).)))))))))).)))).))...

Structure
---  u    g          A       AC                                c    u       c      ca   a       -        c         -gcg   ua                       ccg          c      a   c    -  ua     g   a   a         ----  g    gu 
   ug uuca gcUUCUCGCC UUGCCAA  CAGGGCaagcagaagcgcaaacggacgucuaa ucac gcagcag aagcuc  uca ugccucc cccgugcu gcaucuccc    aca  uaugguuuauguguaccauuuuu   augccgcaga gaugau cug cuug uc  auggu ccc aca ccuugguca    gu gucg  u
   || |||| |||||||||| |||||||  |||||||||||||||||||||||||||||||| |||| ||||||| ||||||  ||| ||||||| |||||||| |||||||||    |||  |||||||||||||||||||||||   |||||||||| |||||| ||| |||| ||  ||||| ||| ||| |||||||||    || ||||   
   ac aagu CGAAGAGCGG AGCGGUU  GUCCcguucgucuucgcguuugccugcagauu agug cgucguc uucgag  agu gcggagg ggguacgg cguagaggg    ugu  auaccaaguauacaugguaaaag   uacggcguuu cuacua ggu gagc ag  uaccg ggg ugu ggaaccagu    ua uagc  c
cag  u    a          A       GC                                c    c       u      ac   a       a        a         aaua   cc                       -aa          a      c   a    u  -c     a   c   a         aggu  g    ag 


Annotation confidence Not enough data
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Genome context
1: 38847604-38848027 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR7733
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR7733-5p

Accession MIMAT0030200
Description Brachypodium distachyon bdi-miR7733-5p mature miRNA
Sequence 11 - UUCUCGCCAUUGCCAAACCAGGGC - 34
Evidence experimental
Illumina [1]

Mature bdi-miR7733-3p

Accession MIMAT0030201
Description Brachypodium distachyon bdi-miR7733-3p mature miRNA
Sequence 390 - CCUGCGUUGGCGAAGGCGAGAAGC - 413
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443