Stem-loop bdi-MIR7718

Accession

MI0025329

Description

Brachypodium distachyon bdi-MIR7718 precursor miRNA

Sequence

ugcugccauuaacugUCAUUUAUUCGUCCAUGGCGAUGGuacgaguauaggauccuuagaaguugcaggauuuuaauuuaggucaacgugucuuucaugcuuuaauggcugguauuuguaauugaaauucaaauuaaaacacgaagcagucacuauccuggaauuauucuaaccguaaguaccuucauaguucuaucauaguggguaggaaauuguguuucuaauccuagaauuuuucuauuucugguuagauaaacagugugucuaacuauagaauuuugcuauuuccuaacuagaauuaacauaauucuacaauuagagacauuuccuacuaaauauaagaagagcuauggauguacuugcggucagaacaauaaaacauagccaacgauuugcuucguguuuuuucuuuauuuugaauuacuaauaccagcuaucaaagcaucaaagacaaguuuaucuaggacaacaagaaacuuuuuaggaucuucuacugcuucuaccAUCGCCUUAGACGAAUAAAUGAGGguugguggcaacaacaaucuuuccaau
((.(((((((((((.(((((((((((((...((((((((((.((((((((((((((.(((((((............(((((((.(((.(((((((.(((((((.((((((((((((.((((((.(((........((((((((((((((((.((((......(((.((((.(((((((((((.(((((((((((.(((((...((((((((...(((((((((((..(((((((....((.((((((((((..(((.((((..((((....))))....)))).))).)))))))))).))....)))))))..)))))))))))))))))))...)))..))))))))))))).))))))))))).)))).))).....)))).....)).))))))))))))))........))).)))))).)))))))))))).))))))).))))))).))).))))))).........))))))).))))))..))).))))).))))))))))...))))))))))))).))))))))))).))..............

Structure

--------------  c           g             CAU          c     -   --      u       gcaggauuuuaa       c   g       c       a            u      g   uucaaauu              -  ----a    ccugga   a    a           c           a  --   gug        auu           cc       uuuc  u          au   c    --ug    a 
              ug ugccauuaacu UCAUUUAUUCGUC   GGCGAUGGua gagua uag  gauccu agaaguu            uuuaggu aac ugucuuu augcuuu auggcugguauu guaauu aaa        aaaacacgaagcag uc     cuau      auu uucu accguaaguac uucauaguucu uc  aua   gguaggaa   guguuucuaau  uagaauu    ua uucugguuag  aaa agug    ucua c
              || ||||||||||| |||||||||||||   |||||||||| ||||| |||  |||||| |||||||            ||||||| ||| ||||||| ||||||| |||||||||||| |||||| |||        |||||||||||||| ||     ||||      ||| |||| ||||||||||| ||||||||||| ||  |||   ||||||||   |||||||||||  |||||||    || ||||||||||  ||| ||||    ||||  
              ac acggugguugG AGUAAAUAAGCAG   CCGCUAccau uucgu auc  cuagga uuuucaa            ggaucua uug acagaaa uacgaaa uaucgaccauaa cauuaa uuu        uuuugugcuucguu ag     gaua      uaa aaga uggcguucaug agguaucgaga ag  uau   ucauccuu   uacagagauua  aucuuaa    au aagaucaauc  uuu ucgu    agau u
uaaccuuucuaaca  a           G             AUU          c     c   uu      u       ---agaacaaca       u   a       c       c            u      g   uauuucuu              u  caacc    -caaaa   c    c           u           -  aa   aaa        ---           ac       uaca  u          -c   a    uuua    a 

Annotation confidence Not enough data

Genome context

1: 40295515-40296069 [+]

Mature bdi-miR7718-5p

• Accession: MIMAT0030158
• Description: Brachypodium distachyon bdi-miR7718-5p mature miRNA
• Sequence: 16 - UCAUUUAUUCGUCCAUGGCGAUGG - 39
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7718-3p

• Accession: MIMAT0030159
• Description: Brachypodium distachyon bdi-miR7718-3p mature miRNA
• Sequence: 505 - AUCGCCUUAGACGAAUAAAUGAGG - 528
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443