Stem-loop sequence bdi-MIR5185k

Accession

MI0025315 (change log)

Description

Brachypodium distachyon miR5185k stem-loop

Gene family

MIPF0001246; MIR5185

Literature search

1 open access papers mention bdi-MIR5185k
(1 sentences)

Stem-loop

   gaucc   a       c            u                     a    g 
5'      cgc aaagucc gcuucuaguuca uuuucaaaucuucuauucaaa uuuu u
        ||| ||||||| |||||||||||| ||||||||||||||||||||| ||||  
3'      gcg uuucagg cgaagaucaagu aagaguuuagaggauaaguuu aaga u
   -----   c       a            u                     -    c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 5: 24868302-24868411 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025315

Mature sequence bdi-miR5185k-5p

• Accession: MIMAT0030125
• Sequence: 20 - uucuaguucauuuuucaaauc - 40
• Evidence: experimental; Illumina [1]

Mature sequence bdi-miR5185k-3p

• Accession: MIMAT0030126
• Sequence: 78 - uuugagaauugaacuagaagc - 98
• Evidence: experimental; Illumina [1]

References

1. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).