Stem-loop sequence bdi-MIR5185f

Accession

MI0025310 (change log)

Description

Brachypodium distachyon miR5185f stem-loop

Gene family

MIPF0001246; MIR5185

Literature search

1 open access papers mention bdi-MIR5185f
(1 sentences)

Stem-loop

   gaucc           c            u           uc     c       g 
5'      cgcggaagucc gcuucuaguuca uuuucaaaucu  uauuc aaauuuu u
        ||||||||||| |||||||||||| |||||||||||  ||||| |||||||  
3'      gcgcuuucagg cgaagaucaagu aagaguuuaga  auaag uuuaaga u
   -----           a            u           ga     -       c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 3: 44959226-44959335 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025310

Mature sequence bdi-miR5185f-5p

• Accession: MIMAT0030115
• Sequence: 20 - uucuaguucauuuuucaaauc - 40
• Evidence: experimental; Illumina [1]

Mature sequence bdi-miR5185f-3p

• Accession: MIMAT0030116
• Sequence: 78 - uuugagaauugaacuagaagc - 98
• Evidence: experimental; Illumina [1]

References

1. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).