Stem-loop sequence bdi-MIR5181c

AccessionMI0025306 (change log)
DescriptionBrachypodium distachyon miR5181c stem-loop
Gene family MIPF0001200; MIR5067
Literature search

1 open access papers mention bdi-MIR5181c
(2 sentences)

Stem-loop 
   -aaacua        c       c  u      c        a        
5'        uacucccu cggucca aa aagugu ucggauuu guacuaa 
          |||||||| ||||||| || |||||| |||||||| |||||| g
3'        augaggga guuaggu uu uucaca agucuaaa caugauu 
   uucuaag        u       a  c      a        a
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Bd21; GCA_000005505.1) Overlapping transcripts
2: 22827665-22827764 [-]
intergenic
Database links

Mature sequence bdi-miR5181c-5p

Accession MIMAT0030107
Sequence

12 -  

ccuccgguccacaauaagugu

 - 32

Get sequence
Evidence experimental; Illumina [1-2]

Mature sequence bdi-miR5181c-3p

Accession MIMAT0030108
Sequence

70 -  

acuucuuauggauuguaggga

 - 90

Get sequence
Evidence experimental; Illumina [1-2]

References

1
PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).
2
PMID:24367943 "Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon" Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ Genome Biol. 14:R145(2013).