Stem-loop sequence bdi-MIR5174c

Accession

MI0025304 (change log)

Description

Brachypodium distachyon miR5174c stem-loop

Gene family

MIPF0001200; MIR5067

Literature search

1 open access papers mention bdi-MIR5174c
(3 sentences)

Stem-loop

   ---------cgcaaguuaaauguua       c        -            ac        aacua 
5'                          cucccuc guucuaug aagauuggcgug  uuugaacu     u
                            ||||||| |||||||| ||||||||||||  ||||||||      
3'                          gagggag caaggugc uuuuaacuguac  aaacuuga     a
   cagcuuggcuuuggcuuaaaccgcc       u        g            ca        caucg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 4: 40461587-40461716 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025304

Mature sequence bdi-miR5174c-5p

• Accession: MIMAT0030103
• Sequence: 18 - ucccuccguucuaugaagauuggc - 41
• Evidence: experimental; Illumina [1]

Mature sequence bdi-miR5174c-3p

• Accession: MIMAT0030104
• Sequence: 82 - caauuuugcguggaacugagggag - 105
• Evidence: experimental; Illumina [1]

References

1. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).