Stem-loop sequence bdi-MIR5163b

Accession

MI0025301 (change log)

Description

Brachypodium distachyon miR5163b stem-loop

Gene family

MIPF0001817; MIR5163

Literature search

1 open access papers mention bdi-MIR5163b
(14 sentences)

Stem-loop

   --caaa     ga  -      c    -                            uaaagcuaucaagauuggauccaguuaugauagcugcuau 
5'       caauu  gc auccac caac ugaaauauuuaaaaauaauuggagcaac                                        a
         |||||  || |||||| |||| ||||||||||||||||||||||||||||                                         
3'       guuaa  cg uaggug guug acuuuauagauuuuuauugacuuuguug                                        c
   aaggug     -g  a      u    g                            ugaaaggaacacaaaaccugagggaaaaggagaggggagg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 4: 11948702-11948890 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bdi-MIR5163b

• bdi-MIR5163b: 4: 11948702-11948890 [-]
• bdi-MIR5163a: 4: 11947824-11948009 [-]

Database links

• miRBase Tracker:MI0025301

Mature sequence bdi-miR5163b-5p

• Accession: MIMAT0030097
• Sequence: 17 - cacccaacugaaauauuuaaa - 37
• Evidence: experimental; Illumina [1]

Mature sequence bdi-miR5163b-3p

• Accession: MIMAT0030098
• Sequence: 152 - uagauauuucagguugugugga - 173
• Evidence: experimental; Illumina [1]

References

1. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).