Stem-loop bdi-MIR395p

Accession

MI0025300

Description

Brachypodium distachyon bdi-MIR395p precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention bdi-MIR395p
(31 sentences)

Sequence

auugccaugaGUUUCCUGCAAGCACUUCACGaggcacuaucgaucccaagggcuacugUGAAGUGUUUGGAGGAACUCuuggugucacc
...((((.(((((.(((.(((((((((((((.(((.((..........)).)))..))))))))))))).)))))))).))))......

Structure

---auu    u     U   G             -a   a  aucg 
      gcca gaGUU CCU CAAGCACUUCACG  ggc cu    a
      |||| ||||| ||| |||||||||||||  ||| ||     
      uggu CUCAA GGA GUUUGUGAAGUgu  ucg ga    u
ccacug    u     -   G             ca   g  accc 

Annotation confidence Not enough data

Genome context

5: 25456430-25456518 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from bdi-MIR395p

Mature bdi-miR395p-5p

• Accession: MIMAT0030095
• Description: Brachypodium distachyon bdi-miR395p-5p mature miRNA
• Sequence: 11 - GUUUCCUGCAAGCACUUCACG - 31
• Evidence: experimental ; Illumina [1]

Mature bdi-miR395p-3p

• Accession: MIMAT0030096
• Description: Brachypodium distachyon bdi-miR395p-3p mature miRNA
• Sequence: 59 - UGAAGUGUUUGGAGGAACUC - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443