Stem-loop sequence bdi-MIR395p

Accession

MI0025300 (change log)

Description

Brachypodium distachyon miR395p stem-loop

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention bdi-MIR395p
(31 sentences)

Stem-loop

   ---auu    u     u   g             -a   a  aucg 
5'       gcca gaguu ccu caagcacuucacg  ggc cu    a
         |||| ||||| ||| |||||||||||||  ||| ||     
3'       uggu cucaa gga guuugugaagugu  ucg ga    u
   ccacug    u     -   g             ca   g  accc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 5: 25456430-25456518 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bdi-MIR395p

• bdi-MIR395e: 5: 25455195-25455344 [+]
• bdi-MIR395f: 5: 25455426-25455521 [+]
• bdi-MIR395g: 5: 25455723-25455811 [+]
• bdi-MIR395h: 5: 25455882-25455957 [+]
• bdi-MIR395c: 5: 25455997-25456122 [+]
• bdi-MIR395j: 5: 25456151-25456238 [+]
• bdi-MIR395k: 5: 25456290-25456375 [+]
• bdi-MIR395p: 5: 25456430-25456518 [+]
• bdi-MIR395l: 5: 25456562-25456657 [+]
• bdi-MIR395q: 5: 25456843-25456926 [+]
• bdi-MIR395n: 5: 25457116-25457205 [+]

Database links

• miRBase Tracker:MI0025300

Mature sequence bdi-miR395p-5p

• Accession: MIMAT0030095
• Sequence: 11 - guuuccugcaagcacuucacg - 31
• Evidence: experimental; Illumina [1]

Mature sequence bdi-miR395p-3p

• Accession: MIMAT0030096
• Sequence: 59 - ugaaguguuuggaggaacuc - 78
• Evidence: experimental; Illumina [1]

References

1. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).