Stem-loop bdi-MIR395o

Accession

MI0025299

Description

Brachypodium distachyon bdi-MIR395o precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention bdi-MIR395o
(31 sentences)

Sequence

uauuaucaugaAUUCCCUACAAGCACUUCACAagaagcuauuccuagggcuauugUGAAGUGUUUGGGGGAACUCuugaugucacc
...(((((.((.((((((.((((((((((((((..((((........)))).)))))))))))))))))))).)).))))).....

Structure

--uau     u  A      A              ga    auu 
     uauca ga UUCCCU CAAGCACUUCACAa  agcu   c
     ||||| || |||||| ||||||||||||||  ||||    
     guagu CU AAGGGG GUUUGUGAAGUguu  ucgg   c
ccacu     u  C      -              -a    gau 

Annotation confidence Not enough data

Genome context

1: 55440734-55440819 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bdi-MIR395o

Mature bdi-miR395o-5p

• Accession: MIMAT0030093
• Description: Brachypodium distachyon bdi-miR395o-5p mature miRNA
• Sequence: 12 - AUUCCCUACAAGCACUUCACA - 32
• Evidence: experimental ; Illumina [1]

Mature bdi-miR395o-3p

• Accession: MIMAT0030094
• Description: Brachypodium distachyon bdi-miR395o-3p mature miRNA
• Sequence: 56 - UGAAGUGUUUGGGGGAACUC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443