Stem-loop sequence bdi-MIR166i

Accession

MI0025297 (change log)

Description

Brachypodium distachyon miR166i stem-loop

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention bdi-MIR166i
(16 sentences)

Stem-loop

   uc      a    c   uc  g   c         g     ---g  -     a    u    u 
5'   uuguug gggg aug  gu ugg ccgagaccg uucau    gc cgucg ucgg cggc a
     |||||| |||| |||  || ||| ||||||||| |||||    || ||||| |||| ||||  
3'   ggcaac cccc uac  cg acc ggcucuggu aggug    cg gcggc ggcc gcug a
   -c      c    u   uu  g   a         -     acug  c     -    -    u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 3: 27457696-27457817 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025297

Mature sequence bdi-miR166i-5p

• Accession: MIMAT0030089
• Sequence: 12 - ggcaugucguguggcccgaga - 32
• Evidence: experimental; Illumina [1]

Mature sequence bdi-miR166i-3p

• Accession: MIMAT0030090
• Sequence: 94 - ucggaccaggcuucauucccc - 114
• Evidence: experimental; Illumina [1]

References

1. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).