Stem-loop sequence bdi-MIR166h

Accession

MI0025296 (change log)

Description

Brachypodium distachyon miR166h stem-loop

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention bdi-MIR166h
(21 sentences)

Stem-loop

   ----ua          u   uu      cu     cu       uugau  a        u - a       u 
5'       gguuaagggg uug  gucugg  cgggg  cccgguc     cg ugcgcgac c c ucucccu c
         |||||||||| |||  ||||||  |||||  |||||||     || |||||||| | | ||||||| a
3'       ccaauuuccc aac  cggacc  gcucu  gggccag     gc augcguug g g agagggg c
   ggcgua          u   uu      ag     ag       ---uu  -        c u c       c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 3: 57427334-57427473 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025296

Mature sequence bdi-miR166h-5p

• Accession: MIMAT0030087
• Sequence: 11 - gguuuguugucuggcucgggg - 31
• Evidence: experimental; Illumina [1]

Mature sequence bdi-miR166h-3p

• Accession: MIMAT0030088
• Sequence: 108 - ucggaccaggcuucaaucccu - 128
• Evidence: experimental; Illumina [1]

References

1. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).