miRBase entry: bdi-MIR159b

Stem-loop bdi-MIR159b


Accession
MI0025295
Description
Brachypodium distachyon bdi-MIR159b precursor miRNA
Gene family
MIPF0000010; MIR159


Sequence

ugguuuugaggugGAGCUCCUAUCAUUCCAAUGAAAGGUCUGUCAGAAGGGUGAUACAGCUGCUUGUUCAUGGUUCCCacuuauccuaucuccauuagaaaggaggagguaggcuuguggUUUGCAUGACCGAGGAGCCGCAUCCACCCCUUGCCGACCGCUGUUUGGAUUGAAGGGAGCUCUGcaucuugaucuuuc
.((((..((.(((((((((((.(((.(((((.....((((.((.((..(((((((.(.(((.((((.(((((....((((....(((((((((...........)))))))))...))))....))))).)))).))).).)).))))))).)).)))).....))))).))).))))))))))).))..))))....

Structure
---u    uu  g           A   U     UGAAA    U  C  AA     -  A A   G    U     GUUC    uuau         auua 
    gguu  ga gugGAGCUCCU UCA UCCAA     GGUC GU AG  GGGUG AU C GCU CUUG UCAUG    CCac    ccuaucucc    g
    ||||  || ||||||||||| ||| |||||     |||| || ||  ||||| || | ||| |||| |||||    ||||    |||||||||    a
    cuag  cu cGUCUCGAGGG AGU AGGUU     CCAG CG UC  CCCAC UA G CGA GAGC AGUAC    ggug    ggauggagg    a
cuuu    uu  a           A   U     UGUCG    C  U  --     C  C C   G    C     GUUU    -uuc         agga 


Annotation confidence Not enough data
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Genome context
2: 1091342-1091539 [+]

Database links

Mature bdi-miR159b-5p.1

Accession MIMAT0030081
Description Brachypodium distachyon bdi-miR159b-5p.1 mature miRNA
Sequence 14 - GAGCUCCUAUCAUUCCAAUGA - 34
Evidence experimental
Illumina [1]

Mature bdi-miR159b-5p.2

Accession MIMAT0030082
Description Brachypodium distachyon bdi-miR159b-5p.2 mature miRNA
Sequence 35 - AAGGUCUGUCAGAAGGGUGAUAC - 57
Evidence experimental
Illumina [1]

Mature bdi-miR159b-5p.3

Accession MIMAT0030083
Description Brachypodium distachyon bdi-miR159b-5p.3 mature miRNA
Sequence 58 - AGCUGCUUGUUCAUGGUUCCC - 78
Evidence experimental
Illumina [1]

Mature bdi-miR159b-3p.3

Accession MIMAT0030084
Description Brachypodium distachyon bdi-miR159b-3p.3 mature miRNA
Sequence 121 - UUUGCAUGACCGAGGAGCCGC - 141
Evidence experimental
Illumina [1]

Mature bdi-miR159b-3p.2

Accession MIMAT0030085
Description Brachypodium distachyon bdi-miR159b-3p.2 mature miRNA
Sequence 142 - AUCCACCCCUUGCCGACCGCUG - 163
Evidence experimental
Illumina [1]

Mature bdi-miR159b-3p.1

Accession MIMAT0030086
Description Brachypodium distachyon bdi-miR159b-3p.1 mature miRNA
Sequence 164 - UUUGGAUUGAAGGGAGCUCUG - 184
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443