Stem-loop sequence bdi-MIR156i

Accession

MI0025294 (change log)

Description

Brachypodium distachyon miR156i stem-loop

Gene family

MIPF0000008; MIR156

Literature search

5 open access papers mention bdi-MIR156i
(25 sentences)

Stem-loop

   -guc   --ac          -    a        a          c   au   gag  -aaaga --ga g      c 
5'     aga    ggcugacaga agag gugagcac cagcggcagc ugc  cug   cu      c    u augugu g
       |||    |||||||||| |||| |||||||| |||||||||| |||  |||   ||      |    | ||||||  
3'     ucu    ucgacugucu ucuc cacucgug guugucgucg acg  gau   ga      g    a uguacg a
   cccc   ccuc          c    c        c          -   cg   aga  aaaggg aaga g      u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 4: 36168961-36169114 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025294

Mature sequence bdi-miR156i-5p

• Accession: MIMAT0030079
• Sequence: 12 - ugacagaagagagugagcac - 31
• Evidence: experimental; Illumina [1]

Mature sequence bdi-miR156i-3p

• Accession: MIMAT0030080
• Sequence: 122 - gcucacccucucucugucagc - 142
• Evidence: experimental; Illumina [1]

References

1. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).