Stem-loop sequence bdi-MIR156h

Accession

MI0025293 (change log)

Description

Brachypodium distachyon miR156h stem-loop

Gene family

MIPF0000008; MIR156

Literature search

5 open access papers mention bdi-MIR156h
(25 sentences)

Stem-loop

   -c    u  gc        -     -         a      gu  uc     a  g 
5'   ggcu gg  ggugacag aagag agugagcac cggccg  cg  acacg cg c
     |||| ||  |||||||| ||||| ||||||||| ||||||  ||  ||||| ||  
3'   ucga uc  cuacuguc uucuc ucacucgug gccggc  gc  ugugc gc g
   uc    -  ac        c     g         c      --  --     c  c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 3: 49973597-49973704 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025293

Mature sequence bdi-miR156h-5p

• Accession: MIMAT0030077
• Sequence: 13 - ugacagaagagagugagcac - 32
• Evidence: experimental; Illumina [1]

Mature sequence bdi-miR156h-3p

• Accession: MIMAT0030078
• Sequence: 77 - gcucacugcucuuccugucauc - 98
• Evidence: experimental; Illumina [1]

References

1. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).