Stem-loop sequence oar-mir-30a

Accession

MI0025277 (change log)

Description

Ovis aries miR-30a stem-loop

Gene family

MIPF0000005; mir-30

Literature search

5 open access papers mention oar-mir-30a
(10 sentences)

Stem-loop

   ----            uc           ---g  ag 
5'     cuguaaacaucc  gacuggaagcu    ug  g
       ||||||||||||  |||||||||||    ||   
3'     gacguuuguagg  cugacuuucgg    ac  c
   cguc            --           aaag  gu 

Deep sequencing

213683 reads, 4.31e+04 reads per million, 13 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Oar_v4.0; GCA_000298735.2): chr9: 2731890-2731956 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025277

Mature sequence oar-miR-30a-5p

• Accession: MIMAT0030055
• Sequence: 2 - uguaaacauccucgacuggaagc - 24
• Deep sequencing: 212285 reads, 13 experiments
• Evidence: experimental; cloned [1]

Mature sequence oar-miR-30a-3p

• Accession: MIMAT0030056
• Sequence: 43 - cuuucagucggauguuugcag - 63
• Deep sequencing: 1393 reads, 13 experiments
• Evidence: experimental; cloned [1]

References

1. PMID:23269700 "MicroRNA in the ovine mammary gland during early pregnancy: spatial and temporal expression of miR-21, miR-205, and miR-200" Galio L, Droineau S, Yeboah P, Boudiaf H, Bouet S, Truchet S, Devinoy E Physiol Genomics. 45:151-161(2013).