miRBase entry: oar-mir-17

Stem-loop oar-mir-17


Accession
MI0025258
Description
Ovis aries oar-mir-17 precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
3 open access papers mention oar-mir-17
(4 sentences)

Sequence

52140 reads, 10276 reads per million, 13 experiments
gucagaauaauguCAAAGUGCUUACAGUGCAGGUAgugauuugugcaucuacugcagugaaggcacuuguagcauuauggugac
((((..(((((((..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))...)))))))..))))

Structure
    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAg ug  u
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacg   uucacgga gu acguc auc ac  g
    gg       aug        a  g     -   u  gu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr10: 66141653-66141736 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oar-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-17-5p

Accession MIMAT0030037
Description Ovis aries oar-miR-17-5p mature miRNA
Sequence 14 - CAAAGUGCUUACAGUGCAGGUA - 35
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23269700
    MicroRNA in the ovine mammary gland during early pregnancy: spatial and temporal expression of miR-21, miR-205, and miR-200
    "Galio L, Droineau S, Yeboah P, Boudiaf H, Bouet S, Truchet S, Devinoy E"
    "Physiol Genomics (2013) 45:151-161