miRBase entry: mtr-MIR2592bo

Stem-loop mtr-MIR2592bo


Accession
MI0025233
Description
Medicago truncatula mtr-MIR2592bo precursor miRNA
Gene family
MIPF0000815; MIR2592

Literature search
1 open access papers mention mtr-MIR2592bo
(2 sentences)

Sequence

aauucaaacuuggcaaaCGGCCAGGACUCAAGCAUUUCGaucggcauucauguuuuuccuuugaaaagauuaaauucuuguuagucugguuuagaugaagguauuaagugucaaggaaugaaccucauuucguuggcacuugaauaccaucaucuaaagcaagccuaacaaaaauuuauuauuuucaaaggaaaacaugaaugucgggcgAAAUGCUUGAGUCCUGUUGUUuggcaaguuugaauu
((((((((((((.((((((((.(((((((((((((((((..(((((((((((((((.((((((((((...((((((.(((((((.(((.(((((((((.((((((((((((((((((((((...))))))).)))))))))).))))).))))))))).).)).))))))).))))))...)))))))))))))))))))))))))..))))))))))))))))))))))))).))))))))))))

Structure
            g        C                 au               u          gau      c       u  - g         a     -          -       a 
aauucaaacuug caaaCGGC AGGACUCAAGCAUUUCG  cggcauucauguuuu ccuuugaaaa   uaaauu uuguuag cu g uuuagauga gguau uaagugucaa ggaauga  
|||||||||||| |||||||| |||||||||||||||||  ||||||||||||||| ||||||||||   |||||| ||||||| || | ||||||||| ||||| |||||||||| ||||||| c
uuaaguuugaac guUUGUUG UCCUGAGUUCGUAAAgc  gcuguaaguacaaaa ggaaacuuuu   auuuaa aacaauc ga c aaaucuacu ccaua guucacgguu cuuuacu  
            g        -                 gg               -          auu      a       c  a g         a     a          g       c 


Annotation confidence Not enough data
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Genome context
chr4: 43332476-43332721 [-]

Database links

Mature mtr-miR2592bo-5p

Accession MIMAT0030007
Description Medicago truncatula mtr-miR2592bo-5p mature miRNA
Sequence 18 - CGGCCAGGACUCAAGCAUUUCG - 39
Evidence experimental
Illumina [1]

Mature mtr-miR2592bo-3p

Accession MIMAT0030008
Description Medicago truncatula mtr-miR2592bo-3p mature miRNA
Sequence 211 - AAAUGCUUGAGUCCUGUUGUU - 231
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23572382
    microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
    "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
    "Planta (2013) 238:91-105