Stem-loop mtr-MIR169l

Accession

MI0025230

Description

Medicago truncatula mtr-MIR169l precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

12 open access papers mention mtr-MIR169l
(51 sentences)

Sequence

gcagagaguguaguaCAGCCAAGGAUGACUUGCCGGccggcguuagugaaggcaaaggcaaaugaucauucauguucaugcaugcauauucuccggccGGCAAGUUUUUCCUUGGCUAUAuuggacuuucuuc
..(((((((.(((((.(((((((((.((((((((((((((.(...(((...(((..((((..(((....)))))))..)))...)))...).))))))))))))))..))))))))).))))).)))))))..

Structure

gc       g     C         -U              c uua   aag   aa    aa   u 
  agagagu uagua AGCCAAGGA  GACUUGCCGGccgg g   gug   gca  ggca  uga c
  ||||||| ||||| |||||||||  |||||||||||||| |   |||   |||  ||||  |||  
  ucuuuca guuAU UCGGUUCCU  UUGAACGGccggcc c   uac   cgu  uugu  acu a
cu       g     A         UU              u uua   gua   ac    --   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature mtr-miR169l-5p

• Accession: MIMAT0030001
• Description: Medicago truncatula mtr-miR169l-5p mature miRNA
• Sequence: 16 - CAGCCAAGGAUGACUUGCCGG - 36
• Evidence: experimental ; Illumina [1]

Mature mtr-miR169l-3p

• Accession: MIMAT0030002
• Description: Medicago truncatula mtr-miR169l-3p mature miRNA
• Sequence: 99 - GGCAAGUUUUUCCUUGGCUAUA - 120
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105