miRBase entry: mtr-MIR7697

Stem-loop mtr-MIR7697


Accession
MI0025226
Description
Medicago truncatula mtr-MIR7697 precursor miRNA


Sequence

gguccgaucuauaUCCGAGAUAUUUGAUCGGAGGcuugaaauuucuuauccuuuuuuuuuuuuuuuaugauugugacaguucaugggaagaugauccauacggaugggucucaucuggugacaguggagcuucacugaacagauagguugcaaagcacagguuaucagaugauuucgcuguaauggacaucuccccaugaacugucacaaucauaaaaaaaaggauaauaaauuucaagccUCCGAUCAAAUAGAUCGGAUAuagaucggauc
((((((((((((((((((..((((((((((((((((((((((((.(((((((((((((.......((((((((((((((((((((((.(((((.(((((((((.((((..((((((((((((.(((..((..(.(((......))))..))....)))..)))))))))))).)))))))).)))))))))).))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))..))))))))))))))))))

Structure
                  GA                        c             uuuuuuu                      a     a     -    a    uc            -a   --ga  uu a   aa 
gguccgaucuauaUCCGA  UAUUUGAUCGGAGGcuugaaauuu uuauccuuuuuuu       uaugauugugacaguucauggg agaug uccau acgg uggg  ucaucuggugac  gug    gc  c cug  c
||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||| ||||| ||||| |||| ||||  ||||||||||||  |||    ||  | |||   
cuaggcuagauAUAGGCU  AUAAACUAGCCUccgaacuuuaaa aauaggaaaaaaa       auacuaacacugucaaguaccc ucuac aggua uguc gcuu  aguagacuauug  cac    cg  g gau  a
                  AG                        u             -------                      c     -     a    -    -u            ga   gaaa  uu -   ag 


Annotation confidence Not enough data
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Genome context
chr3: 16805134-16805406 [+]

Database links

Mature mtr-miR7697-5p

Accession MIMAT0029994
Description Medicago truncatula mtr-miR7697-5p mature miRNA
Sequence 14 - UCCGAGAUAUUUGAUCGGAGG - 34
Evidence experimental
Illumina [1]

Mature mtr-miR7697-3p

Accession MIMAT0029995
Description Medicago truncatula mtr-miR7697-3p mature miRNA
Sequence 242 - UCCGAUCAAAUAGAUCGGAUA - 262
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23572382
    microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
    "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
    "Planta (2013) 238:91-105