miRBase entry: mtr-MIR7696c

Stem-loop mtr-MIR7696c


Accession
MI0025224
Description
Medicago truncatula mtr-MIR7696c precursor miRNA
Gene family
MIPF0001669; MIR7696

Literature search
1 open access papers mention mtr-MIR7696c
(2 sentences)

Sequence

gcuucAAGUUCUCAUAAUUCAAAAAGauaaguuacauuugaaaaacuuccauaaacuuuucgUUUUGAAUUAUGAGAACUUGAagc
((((((((((((((((((((((((.((.(((((......(((....)))....))))).)).))))))))))))))))))))))))

Structure
                        A  u     acauuu   a 
gcuucAAGUUCUCAUAAUUCAAAA Ga aaguu      gaa a
|||||||||||||||||||||||| || |||||      |||  
cgaAGUUCAAGAGUAUUAAGUUUU cu uucaa      cuu a
                        g  u     --auac   c 


Annotation confidence Not enough data
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Genome context
AC225474.24: 39293-39378 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from mtr-MIR7696c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR7696c-5p

Accession MIMAT0029990
Description Medicago truncatula mtr-miR7696c-5p mature miRNA
Sequence 6 - AAGUUCUCAUAAUUCAAAAAG - 26
Evidence experimental
Illumina [1]

Mature mtr-miR7696c-3p

Accession MIMAT0029991
Description Medicago truncatula mtr-miR7696c-3p mature miRNA
Sequence 63 - UUUUGAAUUAUGAGAACUUGA - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23572382
    microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
    "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
    "Planta (2013) 238:91-105