miRBase entry: mtr-MIR397

Stem-loop mtr-MIR397


Accession
MI0025221
Description
Medicago truncatula mtr-MIR397 precursor miRNA
Gene family
MIPF0000120; MIR397

Literature search
4 open access papers mention mtr-MIR397
(21 sentences)

Sequence

uuggagaaacaUCAUUGAGUGCAGCGUUGAUGaaaucuuauguagcaucuagcuaucuuauagauaucaaauauugcaugcuuaauuucaUCUACGCUACACUCAAUUAUGuuuuuuuaa
.(((((((((((.((((((((.(((((.((((((((..((.((((((......(((((...)))))........))).))).)))))))))).))))).)))))))).))))))))))).

Structure
u           C        C     U        cu  u   -   --ucuagc     u 
 uggagaaacaU AUUGAGUG AGCGU GAUGaaau  ua gua gca        uaucu  
 ||||||||||| |||||||| ||||| ||||||||  || ||| |||        ||||| a
 auuuuuuuGUA UAACUCAC UCGCA CUacuuua  au cgu cgu        auaga  
a           U        A     U        --  u   a   uauaaacu     u 


Annotation confidence Not enough data
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Genome context
contig_103871: 626-745 [-]

Database links

Mature mtr-miR397-5p

Accession MIMAT0029984
Description Medicago truncatula mtr-miR397-5p mature miRNA
Sequence 12 - UCAUUGAGUGCAGCGUUGAUG - 32
Evidence experimental
Illumina [1]

Mature mtr-miR397-3p

Accession MIMAT0029985
Description Medicago truncatula mtr-miR397-3p mature miRNA
Sequence 91 - UCUACGCUACACUCAAUUAUG - 111
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23572382
    microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
    "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
    "Planta (2013) 238:91-105