miRBase entry: osa-MIR7694

Stem-loop osa-MIR7694


Accession
MI0025201
Description
Oryza sativa osa-MIR7694 precursor miRNA


Sequence

161 reads, 89 reads per million, 2 experiments
uuacucccuuugucccaaaauauagcAACCUAGUACUGGAUUAGUCACCAccuaguauuaugaaucuggacagagagggguuggacagagggcucuguCCAUAUUCGUAGUGCUAGGUGGugucuaauccaauacuaggcugcuauauuuuuggauggagggaguag
.((((((((((((((.(((((((((((.(((((((.((((((((.((((((((((((((((((((.(((((((((...(......)......))))))))).)))))))))))))))))))).)))))))).))))))).))))))))))).)))))))))))))).

Structure
u              c           A       C        U                    c         ---agg gu 
 uacucccuuugucc aaaauauagcA CCUAGUA UGGAUUAG CACCAccuaguauuaugaau uggacagag      g  u
 |||||||||||||| ||||||||||| ||||||| |||||||| |||||||||||||||||||| |||||||||      |   
 augagggagguagg uuuuauaucgu ggaucau accuaauc guGGUGGAUCGUGAUGCUUA ACCugucuc      c  g
g              u           c       a        u                    U         gggaga ag 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
Chr10: 18864335-18864501 [-]

Database links

Mature osa-miR7694-5p

Accession MIMAT0029959
Description Oryza sativa osa-miR7694-5p mature miRNA
Sequence 27 - AACCUAGUACUGGAUUAGUCACCA - 50
Evidence experimental
454 [1]

Mature osa-miR7694-3p

Accession MIMAT0029960
Description Oryza sativa osa-miR7694-3p mature miRNA
Sequence 99 - CCAUAUUCGUAGUGCUAGGUGG - 120
Evidence experimental
454 [1]

References

  1. PubMed ID: 23627500
    Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance
    "Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B"
    "New Phytol (2013) 199:212-227