miRBase entry: osa-MIR1437b

Stem-loop osa-MIR1437b


Accession
MI0025198
Description
Oryza sativa osa-MIR1437b precursor miRNA
Gene family
MIPF0001762; MIR1437

Literature search
1 open access papers mention osa-MIR1437b
(1 sentences)

Sequence

149 reads, 41 reads per million, 2 experiments
cggaggaaggaggccggcgcacagaggacgagaggugacggcgcguggggaGGGAGGAAACAGUGCCUAGUGcggcgccggagcucgccagcacgcggaaggagguagcggcgguggcggagcgccggcaagcucuccgcgcccuggccgccguccuccucaccucacuccugcGUGCUGGCGAGCUCCGGUGCCGCAcuaggcaccguucccucccuccccgcgcgccaucaccgcucguccucugugcgccggccuccuuccuccg
((((((((((((((((((((((((((((((((.(((((.((((((((((((((((((.(((.((((((((((((((((((((((((((((((((((((.(((((((((.(((((((((((.((((.((........))))))))..)))))))))...)).))))).)).)))))))))))))))))))))))))))))))))))).))).)))))))))))))))))).))))).))))))))))))))))))))))))))))))))

Structure
                                a     c                  A   A                                    a  -     -  --c         --  a    c  caa 
cggaggaaggaggccggcgcacagaggacgag gguga ggcgcguggggaGGGAGG AAC GUGCCUAGUGcggcgccggagcucgccagcacgcgg ag gaggu ag   ggcgguggc  gg gcgc gg   g
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| || ||||| ||   |||||||||  || |||| ||    
gccuccuuccuccggccgcgugucuccugcuc ccacu ccgcgcgccccucccucc uug cacggaucACGCCGUGGCCUCGAGCGGUCGUGcguc uc cucca uc   cugccgccg  cc cgcg cc   c
                                g     a                  c   c                                    c  a     c  cuc         gu  -    -  ucu 


Annotation confidence Not enough data
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Genome context
Chr8: 3955862-3956129 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR1437b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR1437b-5p

Accession MIMAT0029953
Description Oryza sativa osa-miR1437b-5p mature miRNA
Sequence 52 - GGGAGGAAACAGUGCCUAGUG - 72
Evidence experimental
454 [1]

Mature osa-miR1437b-3p

Accession MIMAT0029954
Description Oryza sativa osa-miR1437b-3p mature miRNA
Sequence 175 - GUGCUGGCGAGCUCCGGUGCCGCA - 198
Evidence experimental
454 [1]

References

  1. PubMed ID: 23627500
    Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance
    "Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B"
    "New Phytol (2013) 199:212-227