miRBase entry: bta-mir-2285z

Stem-loop bta-mir-2285z


Accession
MI0025194
Description
Bos taurus bta-mir-2285z precursor miRNA
Gene family
MIPF0000747; mir-2284

Literature search
11 open access papers mention bta-mir-2285z
(15 sentences)

Sequence

4784 reads, 93 reads per million, 73 experiments
uaauuuaaaauguguuggCCAGAAAGUUCAUUCAGGUCCUucccuaacaucuuacagaaaaccugaaugaacuuuuuggccaacaacauuuaauug
.......((((((((((((((((((((((((((((((..(((..(((....)))..))).)))))))))))))))))))))))).)))))).....

Structure
uaauuua      -                        CC   cc   c 
       aaaugu guuggCCAGAAAGUUCAUUCAGGU  Uuc  uaa a
       |||||| ||||||||||||||||||||||||  |||  |||  
       uuuaca caaccgguuuuucaaguaagucca  aag  auu u
--guuaa      a                        -a   ac   c 


Annotation confidence Not enough data
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Genome context
chr20: 13481341-13481436 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-2285z
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-2285z

Accession MIMAT0029950
Description Bos taurus bta-miR-2285z mature miRNA
Sequence 19 - CCAGAAAGUUCAUUCAGGUCCU - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23100578
    Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing
    "Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K"
    "J Anim Sci (2013) 91:90-103