miRBase entry: bta-mir-133c

Stem-loop bta-mir-133c


Accession
MI0025193
Description
Bos taurus bta-mir-133c precursor miRNA
Gene family
MIPF0000029; mir-133

Literature search
12 open access papers mention bta-mir-133c
(42 sentences)

Sequence

reads, None reads per million, experiments
gccaucaaugcgcagcuacagcugguugaaggggaccaaauccaucgaacaguugAUUUGGUUCCAUUUUACCAGCuuuagcaaagcauucggu
(((...(((((...((((.(((((((.(((.(((((((((((.((......)).))))))))))).))).))))))).))))...))))).)))

Structure
   auc     gca    c       u   g           c  cg 
gcc   aaugc   gcua agcuggu gaa gggaccaaauc au  a
|||   |||||   |||| ||||||| ||| ||||||||||| ||   
ugg   uuacg   cgau uCGACCA UUU CCUUGGUUUAg ug  a
   --c     aaa    u       U   A           u  ac 


Annotation confidence Not enough data
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Genome context
chr13: 55446233-55446326 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-133c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-133c

Accession MIMAT0029949
Description Bos taurus bta-miR-133c mature miRNA
Sequence 56 - AUUUGGUUCCAUUUUACCAGC - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23100578
    Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing
    "Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K"
    "J Anim Sci (2013) 91:90-103