miRBase entry: bta-mir-6529b

Stem-loop bta-mir-6529b


Accession
MI0025191
Description
Bos taurus bta-mir-6529b precursor miRNA

Literature search
1 open access papers mention bta-mir-6529b
(1 sentences)

Sequence

10098 reads, 0 reads per million, 69 experiments
gaaaccgugcgcucuuaaagagguaaaaggcacaggcuucauugacauugacgcACUCUGCGCCUCUGAUCUCUcaagagaacagguuuu
((((((.((..(((((..((((((...((((.(((((.(((.......))).))...))).))))...)))))).)))))..))))))))

Structure
      g  cg     aa      aaa    a   ---  u   uu 
gaaacc ug  cucuu  agaggu   aggc cag   gc uca  g
|||||| ||  |||||  ||||||   |||| |||   || |||  a
uuuugg ac  gagaa  UCUCUA   UCCG GUC   cg agu  c
      -  aa     -c      GUC    C   UCA  c   ua 


Annotation confidence Not enough data
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Genome context
chr1: 65675391-65675480 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-6529b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-6529b

Accession MIMAT0029947
Description Bos taurus bta-miR-6529b mature miRNA
Sequence 55 - ACUCUGCGCCUCUGAUCUCU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23100578
    Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing
    "Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K"
    "J Anim Sci (2013) 91:90-103