miRBase entry: bta-mir-2285y

Stem-loop bta-mir-2285y


Accession
MI0025188
Description
Bos taurus bta-mir-2285y precursor miRNA
Gene family
MIPF0000747; mir-2284

Literature search
11 open access papers mention bta-mir-2285y
(15 sentences)

Sequence

3078 reads, 4 reads per million, 72 experiments
uguugaguuggccaaaaaguucguuuggauuucucuguaauaucuuacggaAAAACCCAAACAAACUUUUUUgaacaacccaaua
(((((.((((..(((((((((.((((((.(((.(((((((....))))))).))).)))))).))).))))))..)))).)))))

Structure
     a    gc      -   c      a   c       u 
uguug guug  caaaaa guu guuugg uuu ucuguaa a
||||| ||||  |||||| ||| |||||| ||| |||||||  
auaac caac  gUUUUU CAA CAAACC AAA aggcauu u
     c    aa      U   A      C   A       c 


Annotation confidence Not enough data
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Genome context
chr5: 91517938-91518022 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-2285y
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-2285y

Accession MIMAT0029944
Description Bos taurus bta-miR-2285y mature miRNA
Sequence 52 - AAAACCCAAACAAACUUUUUU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23100578
    Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing
    "Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K"
    "J Anim Sci (2013) 91:90-103