Stem-loop sequence bta-mir-2285af-2

Accession

MI0025187 (change log)

Description

Bos taurus miR-2285af-2 stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

11 open access papers mention bta-mir-2285af-2
(15 sentences)

Stem-loop

        -            a   c               ca  ag 
5' aguau uggguuggccaa aag uuguucagguuuuuc  ua  a
   ||||| |||||||||||| ||| |||||||||||||||  ||   
3' ucgua acccaaucgguu uuc aacaaguucaaaaag  au  c
        u            g   a               ac  ga 

Deep sequencing

223 reads, 5.88 reads per million, 34 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr17: 46439558-46439646 [+]
• Overlapping transcripts:

  antisense

  ENSBTAT00000000563 ; SFSWAP-201; intron 11

Database links

• miRBase Tracker:MI0025187

Mature sequence bta-miR-2285af

• Accession: MIMAT0031057
• Sequence: 13 - gccaaaaagcuuguucagguu - 33
• Deep sequencing: 77 reads, 27 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2285af

References

1. PMID:23100578 "Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing" Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K J Anim Sci. 91:90-103(2013).