miRBase entry: bta-mir-2285af-1

Stem-loop bta-mir-2285af-1


Accession
MI0025186
Description
Bos taurus bta-mir-2285af-1 precursor miRNA
Gene family
MIPF0000747; mir-2284

Literature search
11 open access papers mention bta-mir-2285af-1
(15 sentences)

Sequence

1214 reads, 2 reads per million, 71 experiments
uauguauuggguugGCCAAAAAGCUUGUUCAGGUUuuuacaugauguuaaggaaaaacucaaacaaacuuuuggaccaauccaacaug
(((((..((((((((((((((.(.(((((..((((((..(..........)..))))))..))))).))))))).)))))))))))))

Structure
     au        -      A C     CA      ua auga 
uaugu  uggguugG CCAAAA G UUGUU  GGUUuu  c    u
|||||  |||||||| |||||| | |||||  ||||||  |     
guaca  accuaacc gguuuu c aacaa  ucaaaa  g    g
     --        a      - a     ac      ag aauu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr11: 77678684-77678771 [+]

Database links

Mature bta-miR-2285af

Accession MIMAT0031057
Description Bos taurus bta-miR-2285af mature miRNA
Sequence 15 - GCCAAAAAGCUUGUUCAGGUU - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23100578
    Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing
    "Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K"
    "J Anim Sci (2013) 91:90-103