Stem-loop sequence bta-mir-2285g-3

Accession

MI0025185 (change log)

Description

Bos taurus miR-2285g-3 stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

11 open access papers mention bta-mir-2285g-3
(15 sentences)

Stem-loop

   -uc         u  aa          ca            ---   a 
5'    uuguauugg uu  ccaaaaaguu  uucagguuuuuc   agu a
      ||||||||| ||  ||||||||||  ||||||||||||   ||| g
3'    aauauaacc aa  gguuuuucga  aaguccaaaaag   ucg a
   agu         c  cc          ac            gug   u 

Deep sequencing

2532 reads, 34.2 reads per million, 76 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chrX: 9046048-9046142 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075B153_9913
• miRBase Tracker:MI0025185

Mature sequence bta-miR-2285g

• Accession: MIMAT0024582
• Sequence: 58 - aaaccugaacaagcuuuuugg - 78
• Deep sequencing: 5359 reads, 74 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2285g

References

1. PMID:23100578 "Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing" Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K J Anim Sci. 91:90-103(2013).