miRBase entry: cbn-mir-39-2

Stem-loop cbn-mir-39-2


Accession
MI0025080
Description
Caenorhabditis brenneri cbn-mir-39-2 precursor miRNA
Gene family
MIPF0000304; mir-39


Sequence

agcugauuucaaccacgguaauaagcuccauagauagccuaUCACCGGGUGGAAAUCAGUUAG
((((((((((.(((.((((.(((.(((........))).))).))))))).))))))))))..

Structure
--          a   a    a   a   cca 
  agcugauuuc acc cggu aua gcu   u
  |||||||||| ||| |||| ||| |||    
  UUGACUAAAG UGG GCCA Uau cga   a
GA          G   -    C   c   uag 


Annotation confidence Not enough data
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Genome context
Cbre_Contig831: 36465-36527 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cbn-mir-39-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbn-miR-39

Accession MIMAT0029925
Description Caenorhabditis brenneri cbn-miR-39 mature miRNA
Sequence 42 - UCACCGGGUGGAAAUCAGUUAG - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508