miRBase entry: cbn-mir-35n

Stem-loop cbn-mir-35n

Accession

MI0025079

Description

Caenorhabditis brenneri cbn-mir-35n precursor miRNA

Gene family

MIPF0000096; mir-36

Sequence

ugcugguuuucaccgcgguuauacuucuaacaauaauuaUCACCGGGUUAAAACUUGCAGA
(((.((((((.(((.((((.(((.((........)).))).))))))).)))))).)))..

Structure

--   u      c   g    u   c  cua 
  ugc gguuuu acc cggu aua uu   a
  ||| |||||| ||| |||| ||| ||    
  ACG UCAAAA UGG GCCA Uau aa   c
AG   U      U   -    C   u  uaa

Annotation confidence Not enough data

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Genome context

Cbre_Contig34: 786539-786599 [-]

Clustered miRNAs

18 other miRNAs are < 10 kb from cbn-mir-35n

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-35n

Accession	MIMAT0029941
Description	Caenorhabditis brenneri cbn-miR-35n mature miRNA
Sequence	40 - UCACCGGGUUAAAACUUGCAGA - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508