miRBase entry: cbn-mir-35b-5

Stem-loop cbn-mir-35b-5


Accession
MI0025077
Description
Caenorhabditis brenneri cbn-mir-35b-5 precursor miRNA
Gene family
MIPF0001648; mir-35_2


Sequence

agcugauuucucuacgggugauaauuccaucaagugcuuaUCACCGGGAGUAAAUCUGCUCU
(((.(((((((((...((((((((...(((...))).)))))))).)))).))))).)))..

Structure
--   u     -    acg        uuc   c 
  agc gauuu cucu   ggugauaa   cau  
  ||| ||||| ||||   ||||||||   ||| a
  UCG CUAAA GAGG   CCACUauu   gug  
UC   U     U    --G        --c   a 


Annotation confidence Not enough data
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Genome context
Cbre_Contig34: 785498-785559 [-]
Clustered miRNAs
18 other miRNAs are < 10 kb from cbn-mir-35b-5
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbn-miR-35b

Accession MIMAT0029929
Description Caenorhabditis brenneri cbn-miR-35b mature miRNA
Sequence 41 - UCACCGGGAGUAAAUCUGCUCU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508