miRBase entry: cbn-mir-35b-3

Stem-loop cbn-mir-35b-3


Accession
MI0025074
Description
Caenorhabditis brenneri cbn-mir-35b-3 precursor miRNA
Gene family
MIPF0001648; mir-35_2


Sequence

agcugauuucuccacuggugauaauuccaagaauaguguuuaUCACCGGGAGUAAAUCUGCUCU
(((.(((((((((.(.((((((((...............))))))))))))).))))).)))..

Structure
--   u     -    a u        uuccaa 
  agc gauuu cucc c ggugauaa      g
  ||| ||||| |||| | ||||||||      a
  UCG CUAAA GAGG G CCACUauu      a
UC   U     U    - -        ugugau 


Annotation confidence Not enough data
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Genome context
Cbre_Contig34: 784736-784799 [-]
Clustered miRNAs
19 other miRNAs are < 10 kb from cbn-mir-35b-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbn-miR-35b

Accession MIMAT0029929
Description Caenorhabditis brenneri cbn-miR-35b mature miRNA
Sequence 43 - UCACCGGGAGUAAAUCUGCUCU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508