miRBase entry: cbn-mir-35h

Stem-loop cbn-mir-35h

Accession

MI0025067

Description

Caenorhabditis brenneri cbn-mir-35h precursor miRNA

Gene family

MIPF0001648; mir-35_2

Sequence

agcugguuucuucuacggugauaauucccugaugugucuaUCACCGGGAGUAAUUGGCUUG
((((((((.((((..((((((((...............)))))))))))).))))))))..

Structure

--        u    ua        auuccc 
  agcugguu cuuc  cggugaua      u
  |||||||| ||||  ||||||||      g
  UCGGUUAA GAGG  GCCACUau      a
GU        U    --        cugugu

Annotation confidence Not enough data

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Genome context

Cbre_Contig34: 783170-783230 [-]

Clustered miRNAs

19 other miRNAs are < 10 kb from cbn-mir-35h

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-35h

Accession	MIMAT0029935
Description	Caenorhabditis brenneri cbn-miR-35h mature miRNA
Sequence	41 - UCACCGGGAGUAAUUGGCUUG - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508